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Fix Graph vertices logic and use Graph in MatchGenerator #1455

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gaffney2010
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complete_graph already exists in the graph.py file, so change match_generator.py to use this logic.

This change uncovered a bug in Graph where vertices only includes source nodes in a connected graph. So I fixed this real quick.

@gaffney2010
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This is changing output order on a bunch of tests. I'll just leave this closed.

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