This is the repository of scripts used to generate the maize-GAMER dataset for maize B73 RefGen_v3 gene set 5b+.
This is poor code which has not been commented or cleaned. These scripts are provided as is without any warranty. Use it at your own peril.
The clean and refactored maize-GAMER code is available now as GOMAP and a containerized version of GOMAP is available as GOMAP-singularity