Split clang-tidy CI test into 4 to improve performances #4747
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Awesome, we pushed it down to sometimes below 2min runtime (+3 min install time). |
ax3l
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Mar 8, 2024
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* split clang-tidy checks to improve performances * rename folders and tests * fix concurrency * Simplify --------- Co-authored-by: Axel Huebl <[email protected]>
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… (JFNK) for the nonlinear solver. (#4736) * created Source/FieldSolver/WarXImplicitFieldsEM.cpp file to store functions used with the implicit solvers. Only has ComputeRHSE() and ComputeRHSB() functions thus far. * OneStep_ImplicitPicard routine now uses ComputeRHSE and ComputeRHSB functions in place of EvolveE and EvolveB functions. * created Source/Evolve/WarpXImplicitOps.cpp file to store common functions used by implicit solvers. Moved several functions from WarpXOneStepImplicitPicard.cpp to here. * added NonlinearSolver:: enum. Options are picard and newton. Set from input file using algo.nonlinear_solver = picard, for example. Default is picard. It is not used yet. * changed EvolveScheme::ImplicitPicard and SemiImplicitPicard to ThetaImplicit and SemiImplicit, respectively. This affects parsing from input file. algo.evolve_scheme = implicit_picard ==> theta_implicit. Have not updated Docs yet. * NonlinearSolver ==> NonlinearSolverType * intermediate commit. Added an ImplicitSolversEM class. WarpX owns an instance of this class. OneStepImplicitEM is now done here. This class owns all things pertaining to the implicit integrator. Also added a NonlinerSolvers class, but it is not used yet. * cleaning up ImplicitSolverEM::OneStep(). * more refactoring of ImplicitSovlerEM class. * WarpXFieldVec ==> WarpXSolverVec * removed depricated functions. WarpXSolverVec has zero ghost. * ImplicitSolverEM::OneStep now looks exactly like Picard solver. Next step is to move it there. * ImplicitSolverEM::OneStep() now uses the Picard solver object to solve the nonlinear equation. * changed where implicit solver parameters are printed. * refactoring of WarpXImplicitOps.cpp * added NewtonSolver.H file. Doesn't work yet. * adding more functionality to WarpXSovlerVec class. * added JacobianFunctionJFNK.H file in NonlinarSolvers/ folder. It contains all of the necessary functions required by the linear operator template parameter for AMReX_GMRES. * dotMask object used for dot product from Linear Function class now lives in the implicit solver class. This ensures that 1 and only 1 instance of this object will be defined. dotProduct and norm can now be called through the implicit sovler class. * moved temporary linear_function and GMRES testing lines out of Picard::Define() and into Newton::Define() * intermediate commit. JFNK almost ready. * small refactoring of PreRHSOp() and PostUpdateState() functions. * cleaning things up. * Newton solver runs. GMRES runs. Next step is to do Particle-suppressed (PS) part. * minor clean up. * fixed typo in convergence message for Newton and Picard solvers. * changed how PostUpdateState() is used in implicit solver. Now parsing Picard particle solver parameters in ImplicitSolverEM class. Using a new formula for the epsilon used in the finite-difference Jacobian action calculation that is suitable for large absolute norms of the solution vector. * Picard method for particle is now being used. PS-JFNK works. * moved WarpXImplicitOps.cpp from Source/Evolve/ to Source/FieldSolvers/ImplicitSolvers/ * minor cleanup. PostUpdateState() ==> UpdateWarpXState(). * Moved the particle convergence check into its own function. * added increment function to WarpXSolverVec class. * removed some commented out lines in JacobianFunctionJFNK.H * removed a_tol condition for print message when maximum iterations reached in nonlinear solvers. Newton solver iter is base zero now. * cleaned up picard method for self-consistent particle update. added ablastr warning message for particles that don't converge after the maximum number of iterations. * fixed small bug in PicardSolver related to absolute tolerance check for convegence. Default absolute tolerance values are set to zero. * the mask used to compute the dot product of a WarpXSolverVec is now owned by the WarpXSolverVec class rather then the time solver class. It is a static member to avoid multiple definitions. * defined accessors for Efield_fp and Bfield_fp Vectors owned by WarpX. ImplicitSolver is no longer a friend class of WarpX. Small tidy for PicardSolver.H. * SemiImplicitEM and ThetaImplicitEM are now their own independent derived classes from the base ImplicitSolver class. * added algorithm descriptions to the top of the SemiImplicitEM.cpp and ThetaImplicitEM.cpp files. * updated appropriate files in Examples and Regression folders to reflect new changes. * updating docs. * JacobianFunctionJFNK.H ==> JacobianFunctionMF.H * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * need to call clear on the static vector m_dotMask owned by the WarpXSovlerVec class to avoid malloc_consolidate(): unaligned fastbin chunk detected error messages at simulation finish. * moved WarpXSovlerVec class from ../ImplicitSolvers/Utils/ to ../ImplicitSolvers/. Utils directory is deleted. * ImplicitPushXP: GPU Support for Convergence Test * cleaning up. * Atomic: Fix type of `1` * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * bug fix. * Update Source/FieldSolver/ImplicitSolvers/WarpXSolverVec.H Co-authored-by: Revathi Jambunathan <[email protected]> * Remove Zero * adding Copyright lines to top of files. Removed commented code. * Prevent calling the implicit solver if not initialized * More robust if conditions * set implicit verbose to warpx verbose * Update Source/FieldSolver/ImplicitSolvers/ThetaImplicitEM.cpp * Simplify call to updates of E * changed benchmarks_json file names as needed. * using warpx.verbose * clang-tidying * changed header names. * clang-tyding * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * more clang-tyding * clang tidy again * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * UpdateElectricFiled ==> SetElectricFieldAndApplyBCs * clang tidy * more clang tidy * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * prohibiting copy and move constructors for solver classes. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed bug in move constructor in WarpXSovlerVec. * slight refactoring of ThetaImplicitEM class. * reducing divisions in Picard method for particles. * small cosmetic changes to implicit solvers. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * removed commented out code. * updating Docs and adding briefs. * Fix HIP compilation * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix const * fixed indent. updated comments. * New Python test: Particle-Boundary interaction (#4729) * enable the diagnostic of ParticleScraping in Python * Update picmi.py * Update picmi.py * new test * python update * modification of the script * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update PICMI_inputs_rz.py * json * update * Update PICMI_inputs_rz.py * Update particle_boundary_interaction.json * Update PICMI_inputs_rz.py * Update PICMI_inputs_rz.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update PICMI_inputs_rz.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix hanging script in parallel * Make the test executable * Update analysis script * Update particle_containers.py * Update PICMI_inputs_rz.py * Update analysis.py * Update analysis.py * Update particle_containers.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Remi Lehe <[email protected]> Co-authored-by: Axel Huebl <[email protected]> * Adding normal components to regular boundary buffer (#4742) * first draft * adding normal only * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update ParticleBoundaryBuffer.cpp * Update ParticleBoundaryBuffer.cpp --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add function to set domain boundary potentials from Python (#4740) * add function to set domain boundary potentials from Python * switch function arguments to form `potential_[lo/hi]_[x/y/z]` and add to docs * clean up `ablastr/fields` (#4753) * move PoissonInterpCPtoFP to Interpolate.H * concatenate nested namespaces * Split clang-tidy CI test into 4 to improve performances (#4747) * split clang-tidy checks to improve performances * rename folders and tests * fix concurrency * Simplify --------- Co-authored-by: Axel Huebl <[email protected]> * Replace links to learn git (#4758) * Replace links to learn git * Bugfix in `fields.py` for GPU run without `cupy` (#4750) * Bugfix in `fields.py` for GPU run without `cupy` * apply suggestion from code review * Release 24.03 (#4759) * AMReX: 24.03 * pyAMReX: 24.03 * WarpX: 24.03 * Implement stair-case Yee solver with EB in RZ geometry (#2707) * Allow compilation with RZ EB * Do not push cells for RZ Yee solver, when covered with EB * Fix compilation errors * Fix additional compilation errors * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix additional compilation errors * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add automated test * Add automated test * Fix path in tests * Enable parser in RZ * Update example script * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Clean-up PR * Initialize EB quantities * Modified EM field initialization in 2D with EB * Typo fix * Typo fix * Ignoring unused variables correctly * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Correct condition for updating E * Correct update of B * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update B push * Update input script * Revert "Update input script" This reverts commit 5087485. * Update initialization * Updated test * Move test to a different folder * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add test for WarpX-test.ini * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix path for tests * Update test description * Update test metadata * Add checksum file * Revert changes * Revert changes * Change lx to lr * Revert "Change lx to lr" This reverts commit be3039a. * Change lx to lr --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: lgiacome <[email protected]> * AMReX/pyAMReX/PICSAR: Weekly Update (#4763) * AMReX: Weekly Update * pyAMReX: Weekly Update * clean up (#4761) * Fix compilation * updating some function names to contain Implicit. * fixed bug that caused segfault on GMRES restart. * parsing GMRES restart length from input file. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update field accessor * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * removed +, -, and * operators from WarpXSolverVec class. These operators encourage inefficient vector arithmetic. * fix/workaround to field accessor issue. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * changing implicit-scheme related header files in WarpX.H and WarpX.cpp * WarpX::max_particle_iterations ==> WarpX::max_particle_its_in_implicit_scheme and WarpX::particle_tolerance ==> WarpX:particle_tol_in_implicit_scheme * updating docs. * updating docs again. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * adding comments about the template parameters Vec and Ops used in the NonlinearSolver class. * adding comments. addressing comments from PR. * Ensure that laser particles can converge in the implicit solver * Add braces to make clang-tidy happy * moving nonlinear solver parameters to base ImplicitSolver class * mirrors not to be used with implicit schemes. * moved more to base implicit solver class. adding comments. * removed some WarpXSolverVec functions. Updated comments. * clang tidy complains when removing default copy constructor in WarpXSolverVec.H * amrex::ExecOnFinalize(WarpXSolverVec::clearDotMask) * WarpXSolverVec (const WarpXSolverVec&) = delete * updating briefs for nonlinear solvers. * adding loop over levels. * static cast amrex::Vector.size() to int * updating docs for nonlinear solvers. * adding gmres.restart_length to docs. * fixed typos in docs. * Removed PreRHSOp() call from nonlinear solvers. * clang tidy. * Prohibit = operator for WarpXSolverVec. Using Copy() instead. * Document PICMI function `LoadInitialField` * updating comments in WarpXImplicitOps.cpp * moved static member m_dotMask definition to the header file with inline added to the declaration. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed indent. --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Axel Huebl <[email protected]> Co-authored-by: Debojyoti Ghosh <[email protected]> Co-authored-by: Revathi Jambunathan <[email protected]> Co-authored-by: Remi Lehe <[email protected]> Co-authored-by: Weiqun Zhang <[email protected]> Co-authored-by: Eya D <[email protected]> Co-authored-by: Roelof Groenewald <[email protected]> Co-authored-by: Arianna Formenti <[email protected]> Co-authored-by: Luca Fedeli <[email protected]> Co-authored-by: lgiacome <[email protected]>
Haavaan
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Jun 5, 2024
… (JFNK) for the nonlinear solver. (ECP-WarpX#4736) * created Source/FieldSolver/WarXImplicitFieldsEM.cpp file to store functions used with the implicit solvers. Only has ComputeRHSE() and ComputeRHSB() functions thus far. * OneStep_ImplicitPicard routine now uses ComputeRHSE and ComputeRHSB functions in place of EvolveE and EvolveB functions. * created Source/Evolve/WarpXImplicitOps.cpp file to store common functions used by implicit solvers. Moved several functions from WarpXOneStepImplicitPicard.cpp to here. * added NonlinearSolver:: enum. Options are picard and newton. Set from input file using algo.nonlinear_solver = picard, for example. Default is picard. It is not used yet. * changed EvolveScheme::ImplicitPicard and SemiImplicitPicard to ThetaImplicit and SemiImplicit, respectively. This affects parsing from input file. algo.evolve_scheme = implicit_picard ==> theta_implicit. Have not updated Docs yet. * NonlinearSolver ==> NonlinearSolverType * intermediate commit. Added an ImplicitSolversEM class. WarpX owns an instance of this class. OneStepImplicitEM is now done here. This class owns all things pertaining to the implicit integrator. Also added a NonlinerSolvers class, but it is not used yet. * cleaning up ImplicitSolverEM::OneStep(). * more refactoring of ImplicitSovlerEM class. * WarpXFieldVec ==> WarpXSolverVec * removed depricated functions. WarpXSolverVec has zero ghost. * ImplicitSolverEM::OneStep now looks exactly like Picard solver. Next step is to move it there. * ImplicitSolverEM::OneStep() now uses the Picard solver object to solve the nonlinear equation. * changed where implicit solver parameters are printed. * refactoring of WarpXImplicitOps.cpp * added NewtonSolver.H file. Doesn't work yet. * adding more functionality to WarpXSovlerVec class. * added JacobianFunctionJFNK.H file in NonlinarSolvers/ folder. It contains all of the necessary functions required by the linear operator template parameter for AMReX_GMRES. * dotMask object used for dot product from Linear Function class now lives in the implicit solver class. This ensures that 1 and only 1 instance of this object will be defined. dotProduct and norm can now be called through the implicit sovler class. * moved temporary linear_function and GMRES testing lines out of Picard::Define() and into Newton::Define() * intermediate commit. JFNK almost ready. * small refactoring of PreRHSOp() and PostUpdateState() functions. * cleaning things up. * Newton solver runs. GMRES runs. Next step is to do Particle-suppressed (PS) part. * minor clean up. * fixed typo in convergence message for Newton and Picard solvers. * changed how PostUpdateState() is used in implicit solver. Now parsing Picard particle solver parameters in ImplicitSolverEM class. Using a new formula for the epsilon used in the finite-difference Jacobian action calculation that is suitable for large absolute norms of the solution vector. * Picard method for particle is now being used. PS-JFNK works. * moved WarpXImplicitOps.cpp from Source/Evolve/ to Source/FieldSolvers/ImplicitSolvers/ * minor cleanup. PostUpdateState() ==> UpdateWarpXState(). * Moved the particle convergence check into its own function. * added increment function to WarpXSolverVec class. * removed some commented out lines in JacobianFunctionJFNK.H * removed a_tol condition for print message when maximum iterations reached in nonlinear solvers. Newton solver iter is base zero now. * cleaned up picard method for self-consistent particle update. added ablastr warning message for particles that don't converge after the maximum number of iterations. * fixed small bug in PicardSolver related to absolute tolerance check for convegence. Default absolute tolerance values are set to zero. * the mask used to compute the dot product of a WarpXSolverVec is now owned by the WarpXSolverVec class rather then the time solver class. It is a static member to avoid multiple definitions. * defined accessors for Efield_fp and Bfield_fp Vectors owned by WarpX. ImplicitSolver is no longer a friend class of WarpX. Small tidy for PicardSolver.H. * SemiImplicitEM and ThetaImplicitEM are now their own independent derived classes from the base ImplicitSolver class. * added algorithm descriptions to the top of the SemiImplicitEM.cpp and ThetaImplicitEM.cpp files. * updated appropriate files in Examples and Regression folders to reflect new changes. * updating docs. * JacobianFunctionJFNK.H ==> JacobianFunctionMF.H * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * need to call clear on the static vector m_dotMask owned by the WarpXSovlerVec class to avoid malloc_consolidate(): unaligned fastbin chunk detected error messages at simulation finish. * moved WarpXSovlerVec class from ../ImplicitSolvers/Utils/ to ../ImplicitSolvers/. Utils directory is deleted. * ImplicitPushXP: GPU Support for Convergence Test * cleaning up. * Atomic: Fix type of `1` * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * bug fix. * Update Source/FieldSolver/ImplicitSolvers/WarpXSolverVec.H Co-authored-by: Revathi Jambunathan <[email protected]> * Remove Zero * adding Copyright lines to top of files. Removed commented code. * Prevent calling the implicit solver if not initialized * More robust if conditions * set implicit verbose to warpx verbose * Update Source/FieldSolver/ImplicitSolvers/ThetaImplicitEM.cpp * Simplify call to updates of E * changed benchmarks_json file names as needed. * using warpx.verbose * clang-tidying * changed header names. * clang-tyding * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * more clang-tyding * clang tidy again * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * UpdateElectricFiled ==> SetElectricFieldAndApplyBCs * clang tidy * more clang tidy * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * prohibiting copy and move constructors for solver classes. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed bug in move constructor in WarpXSovlerVec. * slight refactoring of ThetaImplicitEM class. * reducing divisions in Picard method for particles. * small cosmetic changes to implicit solvers. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * removed commented out code. * updating Docs and adding briefs. * Fix HIP compilation * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix const * fixed indent. updated comments. * New Python test: Particle-Boundary interaction (ECP-WarpX#4729) * enable the diagnostic of ParticleScraping in Python * Update picmi.py * Update picmi.py * new test * python update * modification of the script * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update PICMI_inputs_rz.py * json * update * Update PICMI_inputs_rz.py * Update particle_boundary_interaction.json * Update PICMI_inputs_rz.py * Update PICMI_inputs_rz.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update PICMI_inputs_rz.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix hanging script in parallel * Make the test executable * Update analysis script * Update particle_containers.py * Update PICMI_inputs_rz.py * Update analysis.py * Update analysis.py * Update particle_containers.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Remi Lehe <[email protected]> Co-authored-by: Axel Huebl <[email protected]> * Adding normal components to regular boundary buffer (ECP-WarpX#4742) * first draft * adding normal only * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update ParticleBoundaryBuffer.cpp * Update ParticleBoundaryBuffer.cpp --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add function to set domain boundary potentials from Python (ECP-WarpX#4740) * add function to set domain boundary potentials from Python * switch function arguments to form `potential_[lo/hi]_[x/y/z]` and add to docs * clean up `ablastr/fields` (ECP-WarpX#4753) * move PoissonInterpCPtoFP to Interpolate.H * concatenate nested namespaces * Split clang-tidy CI test into 4 to improve performances (ECP-WarpX#4747) * split clang-tidy checks to improve performances * rename folders and tests * fix concurrency * Simplify --------- Co-authored-by: Axel Huebl <[email protected]> * Replace links to learn git (ECP-WarpX#4758) * Replace links to learn git * Bugfix in `fields.py` for GPU run without `cupy` (ECP-WarpX#4750) * Bugfix in `fields.py` for GPU run without `cupy` * apply suggestion from code review * Release 24.03 (ECP-WarpX#4759) * AMReX: 24.03 * pyAMReX: 24.03 * WarpX: 24.03 * Implement stair-case Yee solver with EB in RZ geometry (ECP-WarpX#2707) * Allow compilation with RZ EB * Do not push cells for RZ Yee solver, when covered with EB * Fix compilation errors * Fix additional compilation errors * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix additional compilation errors * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add automated test * Add automated test * Fix path in tests * Enable parser in RZ * Update example script * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Clean-up PR * Initialize EB quantities * Modified EM field initialization in 2D with EB * Typo fix * Typo fix * Ignoring unused variables correctly * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Correct condition for updating E * Correct update of B * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update B push * Update input script * Revert "Update input script" This reverts commit 5087485. * Update initialization * Updated test * Move test to a different folder * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add test for WarpX-test.ini * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix path for tests * Update test description * Update test metadata * Add checksum file * Revert changes * Revert changes * Change lx to lr * Revert "Change lx to lr" This reverts commit be3039a. * Change lx to lr --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: lgiacome <[email protected]> * AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4763) * AMReX: Weekly Update * pyAMReX: Weekly Update * clean up (ECP-WarpX#4761) * Fix compilation * updating some function names to contain Implicit. * fixed bug that caused segfault on GMRES restart. * parsing GMRES restart length from input file. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update field accessor * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * removed +, -, and * operators from WarpXSolverVec class. These operators encourage inefficient vector arithmetic. * fix/workaround to field accessor issue. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * changing implicit-scheme related header files in WarpX.H and WarpX.cpp * WarpX::max_particle_iterations ==> WarpX::max_particle_its_in_implicit_scheme and WarpX::particle_tolerance ==> WarpX:particle_tol_in_implicit_scheme * updating docs. * updating docs again. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * adding comments about the template parameters Vec and Ops used in the NonlinearSolver class. * adding comments. addressing comments from PR. * Ensure that laser particles can converge in the implicit solver * Add braces to make clang-tidy happy * moving nonlinear solver parameters to base ImplicitSolver class * mirrors not to be used with implicit schemes. * moved more to base implicit solver class. adding comments. * removed some WarpXSolverVec functions. Updated comments. * clang tidy complains when removing default copy constructor in WarpXSolverVec.H * amrex::ExecOnFinalize(WarpXSolverVec::clearDotMask) * WarpXSolverVec (const WarpXSolverVec&) = delete * updating briefs for nonlinear solvers. * adding loop over levels. * static cast amrex::Vector.size() to int * updating docs for nonlinear solvers. * adding gmres.restart_length to docs. * fixed typos in docs. * Removed PreRHSOp() call from nonlinear solvers. * clang tidy. * Prohibit = operator for WarpXSolverVec. Using Copy() instead. * Document PICMI function `LoadInitialField` * updating comments in WarpXImplicitOps.cpp * moved static member m_dotMask definition to the header file with inline added to the declaration. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed indent. --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Axel Huebl <[email protected]> Co-authored-by: Debojyoti Ghosh <[email protected]> Co-authored-by: Revathi Jambunathan <[email protected]> Co-authored-by: Remi Lehe <[email protected]> Co-authored-by: Weiqun Zhang <[email protected]> Co-authored-by: Eya D <[email protected]> Co-authored-by: Roelof Groenewald <[email protected]> Co-authored-by: Arianna Formenti <[email protected]> Co-authored-by: Luca Fedeli <[email protected]> Co-authored-by: lgiacome <[email protected]>
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This PR is an attempt at speeding up clang-tidy CI test by splitting the test into 4 tests (1D, 2D, RZ, and 3D).