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pyPESTO 0.2.7
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@yannikschaelte yannikschaelte released this 03 Aug 14:26
· 551 commits to main since this release
v0.2.7
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  • Finite Differences:

    • Adaptive finite differences (#671)
    • Add helper function for checking gradients of objectives (#690)
    • Small bug fixes (#711, #714)

  • Storage:

    • Store representation of the objective (#669)
    • Minor fixes in HDF5 history (#679)
    • HDF5 reader for ensemble predictions (#681)
    • Update storage demo jupyter notebook (#699)
    • Option to trim trace to be monotonically decreasing (#705)

  • General:

    • Improved tests and bug fixes of validation intervals (#676, #685)
    • Add input file validation via PEtab linter for PEtab import (#678)
    • Remove default values from docstring (#680)
    • Minor fixes/improvements of ensembles (#687, #688)
    • Fix sorting of optimization values including NaN values (#691)
    • Specify axis limits for plotting (#693)
    • Minor fixes in visualization (#696)
    • Add installation option all_optimizers (#695)
    • Improve installation documentation (#689)
    • Update pysb and BNG version on GitHub Actions (#697)
    • Bug fix in steady state guesses (#715)
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