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pyPESTO 0.2.8
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@yannikschaelte yannikschaelte released this 28 Oct 18:23
· 529 commits to main since this release
v0.2.8
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Learn about vigilant mode.

  • PEtab:

    • Use correct measurement column name in rdatas_to_simulation_df (#721)
    • Visualize optimized model fit via PEtab problem (#725)
    • Un-ignore observable scaling tests (#742)
    • New function to plot model trajectory with custom time points (#739)

  • Optimization:

    • OOD Refactor startpoint generation (#732)
    • Update to fides 0.6.0 (#733)
    • Correctly report FVAL vs CHI2 values in fides (#741)

  • Ensemble:

    • Option for using weighted ensemble means (#702)
    • Default names and bounds for Ensemble.from_sample (#730)

  • Storage:

    • Load optimization result from HDF5 history (#726)

  • General:

    • Enable use of priors with least squares optimizers (#745)
    • Add temporary CITATION.cff file (#734)
    • Regular scheduled CI runs (#754)
    • Allow to not copy objective in problem (#756)

  • Fixes:

    • Fix non-exported visualization in notebook (#729)
    • Mark some more tests as flaky (#704)
    • Fix minor data type and OOD issues in parameter and waterfall plots
      (#731)
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