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16 Open 23 Closed
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Issues list

Have Qiita/SPP automatically perform some Katharoseq processing.
#154 opened Sep 23, 2024 by charles-cowart
Update fastq file parsing regexes in util.py
#139 opened May 20, 2024 by charles-cowart
@charles-cowart
Update job polling mechanism
#134 opened Mar 12, 2024 by charles-cowart
@charles-cowart
InstrumentUtils() types should be vetted by IGM, Illumina
#124 opened Feb 15, 2024 by charles-cowart
@charles-cowart
improve error reporting on run-id
#122 opened Feb 13, 2024 by antgonza
@charles-cowart
Add other wet-lab added samples make it to the sample info file.
#121 opened Feb 12, 2024 by antgonza
@charles-cowart
allow configuration file to have resources per instrument type
#106 opened Oct 10, 2023 by antgonza
@charles-cowart
7
Update mg-scripts to take advantage of Illumina file spec
#79 opened May 2, 2022 by charles-cowart
@charles-cowart
Add early abort and notification when a job-step yields zero files.
#78 opened May 2, 2022 by charles-cowart
@charles-cowart
Calculate metrics for each job step low-priority
#77 opened May 2, 2022 by charles-cowart
@charles-cowart
Define the minimum length of reads for fastp invocation w/in config file
#76 opened Apr 19, 2022 by charles-cowart
@charles-cowart
reuse blanks for multiple projects in the same plate urgent-need
#64 opened Jan 25, 2022 by antgonza
@charles-cowart
FastQCJob _scan_fastq_files() method needs reevaluation
#31 opened Oct 8, 2021 by charles-cowart
replace _scan_fastq_files for 3 methods
#22 opened Oct 6, 2021 by antgonza
@charles-cowart
add code to be able to run tests via python
#17 opened Oct 5, 2021 by antgonza
Validate instrument model in sample sheet and run outputs
#4 opened Feb 29, 2020 by ElDeveloper
3
ProTip! What’s not been updated in a month: updated:<2024-10-15.