Releases · common-workflow-language/user_guide

What's Changed

Consistent formatting and additional array detail by @tobyhodges in #26
Custom Types Lesson by @tobyhodges in #27
Software Requirements Lesson by @tobyhodges in #28
Fix input file parameter name by @manabuishii in #30
Fix record.cwl to make section 11 workable for record-job2.yml by @tom-tan in #35
added subworkflowfeaturerequirement note by @tobyhodges in #40
Download link for file-formats.bam by @tobyhodges in #41
Fix extension to yml by @manabuishii in #45
Fix typo by @manabuishii in #46
Add how to download test_proteins.fasta by @manabuishii in #47
Categorize the examples for each section by @tom-tan in #43
SPDX license identifiers by @tobyhodges in #42
URL for the user guide changed by @BenjaminHCCarr in #50
Add files for the examles in user guide by @tom-tan in #51
Add conformance test for section 4 using cwltest by @tom-tan in #52
Add .travis.yml to test the examples by @tom-tan in #53
move icons to a better place by @mr-c in #56
Travis Badge on README by @manabuishii in #57
Fix branch parameter for travis badge by @manabuishii in #58
Enable CI for gh-pages by @tom-tan in #59
clarify CWL citation versus user guide citation by @mr-c in #60
Fix #66 missing link for recommended practices by @manabuishii in #67
expand & correct list of expression capable fields by @mr-c in #68
Update docker image for Java by @tom-tan in #69
suggestion for correction in introduction text by @hmenager in #65
Add tests for the examples by @tom-tan in #61
Fix link and update tags to fit to example by @khillion in #70
Update README.md by @sharmatime in #74
Update 07-containers.md by @jessMaia in #78
Update 02-1st-example.md by @rmccole in #79
Update 19-custom-types.md by @sharmatime in #83
Update custom-types.cwl by @sharmatime in #84
Update custom-types.yml by @sharmatime in #85
Update 02-1st-example.md by @rmccole in #82
Update 03-input.md by @rmccole in #81
Create biom-convert-table.yaml by @sharmatime in #87
Create rich_sparse_otu_table.biom by @sharmatime in #86
Update 16-file-formats.md by @sharmatime in #75
Fix indentation in 02-1st-example.md by @jirikuncar in #88
Use released versions of cwltool, cwltest by @mr-c in #93
Fix an example of Section7 not to use side effect by @tom-tan in #92
fix edam mismatch by @mr-c in #97
Replace output identifier output with example_out by @tom-tan in #96
Fix the example for section 09 not to use side effect by @tom-tan in #94
Replace output identifier for section 7 with example_out by @tom-tan in #95
Add test for an example in Section 19 by @tom-tan in #102
Change the examples in Section 11 not to use side-effects by @tom-tan in #98
Change an example in Section 12 not to use side-effect by @tom-tan in #99
Change an example in section 13 not to use side-effect by @tom-tan in #100
Change an example in Section 14 not to use side-effect by @tom-tan in #101
clean up syntax by @mr-c in #105
Update 19-custom-types.md by @zipho in #106
User permalink for original CWL user guide by @mr-c in #109
List where parameter references & expressions are allowed by @mr-c in #110
Update 09-array-inputs.md by @majensen in #111
Fix bad heading in chapter 13 by @sersorrel in #112
[ImgBot] optimizes images by @imgbot in #113
add containers best practices by @mr-c in #118
16-file-formats: fix output name record by @jirikuncar in #71
[WIP] Scatter guide by @biokcb in #114
Update 16-file-formats.md by @sharmatime in #76
Fix wrong extension cwl -> yml in #122
fix missing spdx link by @mr-c in #123
Add visualization from view.commonwl.org by @mr-c in #108
[ImgBot] Optimize images by @imgbot in #124
Update 17-metadata.md by @sharmatime in #77
Update 02-1st-example.md by @rmccole in #80
Add filename by @manabuishii in #128
Add workflow filename by @manabuishii in #127
Fix typo by @alimanfoo in #131
Expand create file example to show how to inject expressions into bash scripts in #137
Update 02-1st-example.md by @longr in #138
Update 04-output.md by @longr in #139
Update _episodes/21-1st-workflow.md by @emannuelOC in #145
Update 06-params.md by @longr in #142
Update introductory text on landing page by @tobyhodges in #149
YAML guide by @tobyhodges in #151
Improve question wording by @tobyhodges in #152
Typo by @kinow in #153
encourage contributions from readers by @tobyhodges in #154
WIP: Miscellaneous page by @tobyhodges in #156
edit example_output values by @tsuchi8 in #147
Update 14-runtime.md by @longr in #144
Add Translation Button by @manabuishii in #133
Update 07-containers.md by @longr in #143
About using hyphen as id by @manabuishii in #165
WORKAROUND for filename has space character by @manabuishii in https://github.com/common-workflow-languag...