Merge pull request #11 from elixir-europe/minor_fixes

release 1.0.7 - Minor fixes

.gitignore

@@ -87,6 +87,7 @@ celerybeat-schedule
 # virtualenv
 .venv/
 venv/
+venv-py/
 ENV/
 
 # Spyder project settings

config/extract-brapi/entities/contact.json

@@ -0,0 +1 @@
+{}

config/extract-brapi/entities/germplasm.json

@@ -0,0 +1,27 @@
+{
+  "list": {
+    "call": [
+      {
+        "method": "GET",
+        "path": "germplasm",
+        "page-size": 500
+      },
+      {
+        "method": "GET",
+        "path": "germplasm-search",
+        "page-size": 500
+      },
+      {
+        "method": "POST",
+        "path": "germplasm-search",
+        "page-size": 500
+      }
+    ]
+  },
+  "detail": {
+    "call": {
+      "method": "GET",
+      "path": "germplasm/{germplasmDbId}"
+    }
+  }
+}

config/extract-brapi/entities/location.json

@@ -0,0 +1,18 @@
+{
+  "list": {
+    "call": [
+      {
+        "method": "GET",
+        "path": "locations",
+        "page-size": 500
+      }
+    ]
+  },
+  "detail": {
+    "skip-if-in-store": true,
+    "call": {
+      "method": "GET",
+      "path": "locations/{locationDbId}"
+    }
+  }
+}

config/extract-brapi/entities/observationUnit.json

@@ -0,0 +1,28 @@
+{
+  "-list": {
+    "call": [
+      {
+        "method": "POST",
+        "path": "phenotypes-search",
+        "page-size": 500
+      }
+    ]
+  },
+  "links": [
+    {
+      "type": "internal",
+      "entity": "study",
+      "json-path": "."
+    },
+    {
+      "type": "internal",
+      "entity": "germplasm",
+      "json-path": "."
+    },
+    {
+      "type": "internal",
+      "entity": "observationVariable",
+      "json-path": ".observations.observationVariableDbId"
+    }
+  ]
+}

config/extract-brapi/entities/observationVariable.json

@@ -0,0 +1,23 @@
+{
+  "list": {
+    "call": [
+      {
+        "method": "GET",
+        "path": "variables",
+        "page-size": 500
+      },
+      {
+        "method": "POST",
+        "path": "variables-search",
+        "page-size": 500
+      }
+    ]
+  },
+  "links": [
+    {
+      "type": "internal",
+      "entity": "ontology",
+      "json-path": "."
+    }
+  ]
+}

config/extract-brapi/entities/ontology.json

@@ -0,0 +1,11 @@
+{
+  "list": {
+    "call": [
+      {
+        "method": "GET",
+        "path": "ontologies",
+        "page-size": 500
+      }
+    ]
+  }
+}