Refactor transformation, remove the larck approach

Simplification of the transformation process to a full python approach

Merged version between FAIDARE and Datadiscovery

Feat/find by germplasm and trait names (#62)

* Add generation of germplasm names list for studies

* Add traitNames field in datadiscovery

Fusion faidare-datadiscovery

Merge pull request #56 from elixir-europe/merge-faidare-dd

Merge faidare dd

Premerging of fusion faidare-datadiscovery-legacy

Premerging of fusion faidare-datadiscovery

v1.0.7 release

• Add compatibility with BrAPI from v1 to v1.3
• Add JSON validation on strictly needed BrAPI fields
• Update dependencies
• Simplify the configuration folder structure
• Refactor python packages

v1.0.6 release

• Simplify the data discovery document schema for the Elixir GnpIS data lookup service
• Add better binary distribution using Git LFS
• Add documentation on usage

v1.0.5 bug fix release

• Fix error on empty input JSON

v1.0.4 bug fix release

Bug fixes

• Fix possible concurrent file writes using randomness in folder name during BrAPI object indexing on disk.
• Fix incoherent json file writes missing flush before close.
• Fix unexpected JSONDecode error flushing the file system write cache.
• Fix bulk json naming
• Fix URI generation using URL encoding.
• Add error reporting on JSON decode error
• Add documentation on how to release the project.

v1.0 release

Fix package requirements, fix datadiscovery document description gene…

prototype

Earlier prototype version with ElasticSearch (JSON) & Virtuoso (JSON-LD & RDF) transformation